PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g045660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 630aa    MW: 72323.3 Da    PI: 4.7655
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g045660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016600619221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C  Cg+ F ++  L++H+ 
  Csa07g045660.1 600 ECDRCGEEFESRTKLHKHLA 619
                     5*****************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.4E-23687IPR001623DnaJ domain
SuperFamilySSF465651.7E-237114IPR001623DnaJ domain
SMARTSM002711.0E-221174IPR001623DnaJ domain
CDDcd062571.74E-161271IPR001623DnaJ domain
PROSITE profilePS5007619.5971282IPR001623DnaJ domain
PfamPF002268.3E-211379IPR001623DnaJ domain
PRINTSPR006254.4E-151432IPR001623DnaJ domain
PRINTSPR006254.4E-153247IPR001623DnaJ domain
PRINTSPR006254.4E-155474IPR001623DnaJ domain
PROSITE patternPS0063605978IPR018253DnaJ domain, conserved site
SuperFamilySSF576674.76E-15294348No hitNo description
SMARTSM004511.4E-7303337IPR003604Zinc finger, U1-type
PfamPF121713.5E-10305331IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82306330IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280308330IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723599628IPR007087Zinc finger, C2H2
SMARTSM003555.2599623IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280601623IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MASSSSRSEK RCHYEVLGIS KESSPDEIRS AYRRLALQRH PDKLMKAGGL SEAEATAQFQ  60
ELVHAYEVLS DPKERAWYDS HRSQILFADH GSAGGSKSGG MPGGSVPDLF AFFSTTVYSG  120
YSDTGKGFYK VFYDVFNSVY LNEIKFARTL GLRMDSVREA PIMGNLESPY AQVTAFYNYW  180
LGFCTVMDFC WVDQYDVVAG PNRKSRRLME EENKKLRKKA KREYNDTVRG LAEFVKKRDK  240
RVIDMMVKKK EEERERKKKM EKERLERAMN YEEPDWAKAH EGEEEGAGFN VLEEDDDDAE  300
RKNEQLYCIV CSKKFKSEKQ WKNHEQSKKH KEKVAELRES LTDYEEETEE EEIDETLDPP  360
ESVDQLHEKF QEGFNIDGED EDVKEEVSGE ADETDDEYFG AEEDMKGSSE SEDEDVDDEM  420
SLLKKMVSGQ KNKRKNSVSM EEDEVEVEIE RDTADFSEFD NQKSTGRNKE AKEERSKHDA  480
GKEMADDTIK VQIPEDDDDP DENVNATDSA SRAFEDSQKD EADSMQYDNR KSTGRRRRSK  540
KGKDKNNLGG STEKSSEADD NTPYVNRDME TQDYKKVPRS KKSTRGMKSK GTTKKNSNNE  600
CDRCGEEFES RTKLHKHLAD SGHATVKSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bqz_A1e-121081268DNAJ
1bq0_A2e-121081268DNAJ
1xbl_A2e-121081268DNAJ
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213221KKLRKKAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0205790.0AC020579.5 Arabidopsis thaliana chromosome 1 BAC F1O17 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416275.10.0PREDICTED: dnaJ homolog subfamily C member 21-like
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLR0HTW80.0R0HTW8_9BRAS; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_20017210.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.10.0DNAJ heat shock N-terminal domain-containing protein